-----------------------
Start of variable list:
-----------------------
Sample_ID:
E3-MAA000907-3_11_M-1-1
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Fri Oct 12 20:41:02 EDT 2018
Running on node : scc-ka3
Current directory : /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/Scripts/03_Read_Length
Current job ID : 8791992
Current job name : Step_03_E3-MAA000907-3_11_M-1-1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/8791992.1.linga

Loading required modules...


List files in scratch directory:

total 19M
drwx------    2 kkarri waxmanlab 4.0K Oct 12 20:41 .
drwxrwxrwt. 108 root   root      108K Oct 12 20:41 ..
-rw-r--r--    1 kkarri waxmanlab 8.8M Oct 12 20:41 SRR6576267_1.fastq.gz
-rw-r--r--    1 kkarri waxmanlab 9.6M Oct 12 20:41 SRR6576267_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR6576267_1.fastq


Processing SRR6576267_2.fastq


Ending Read Length


List files in scratch

total 95M
drwx------    2 kkarri waxmanlab 4.0K Oct 12 20:41 .
drwxrwxrwt. 108 root   root      108K Oct 12 20:41 ..
-rw-r--r--    1 kkarri waxmanlab  48M Oct 12 20:41 SRR6576267_1.fastq
-rw-r--r--    1 kkarri waxmanlab  48M Oct 12 20:41 SRR6576267_2.fastq
==========================================================
Finished on : Fri Oct 12 20:41:09 EDT 2018
0 hours, 0 minutes and 7 seconds elapsed.
==========================================================