Left reads: Input : 263068 Mapped : 218668 (83.1% of input) of these: 7033 ( 3.2%) have multiple alignments (518 have >20) Right reads: Input : 263068 Mapped : 209444 (79.6% of input) of these: 6786 ( 3.2%) have multiple alignments (518 have >20) 81.4% overall read mapping rate. Aligned pairs: 184065 of these: 6009 ( 3.3%) have multiple alignments 3684 ( 2.0%) are discordant alignments 68.6% concordant pair alignment rate.