Left reads: Input : 283323 Mapped : 219725 (77.6% of input) of these: 11057 ( 5.0%) have multiple alignments (222 have >20) Right reads: Input : 283323 Mapped : 218600 (77.2% of input) of these: 11015 ( 5.0%) have multiple alignments (222 have >20) 77.4% overall read mapping rate. Aligned pairs: 187159 of these: 9666 ( 5.2%) have multiple alignments 4096 ( 2.2%) are discordant alignments 64.6% concordant pair alignment rate.