Left reads: Input : 494898 Mapped : 400224 (80.9% of input) of these: 25602 ( 6.4%) have multiple alignments (3679 have >20) Right reads: Input : 494898 Mapped : 385636 (77.9% of input) of these: 24934 ( 6.5%) have multiple alignments (3678 have >20) 79.4% overall read mapping rate. Aligned pairs: 332668 of these: 21936 ( 6.6%) have multiple alignments 6251 ( 1.9%) are discordant alignments 66.0% concordant pair alignment rate.