Left reads: Input : 451814 Mapped : 373504 (82.7% of input) of these: 21359 ( 5.7%) have multiple alignments (438 have >20) Right reads: Input : 451814 Mapped : 371443 (82.2% of input) of these: 21442 ( 5.8%) have multiple alignments (438 have >20) 82.4% overall read mapping rate. Aligned pairs: 326639 of these: 19174 ( 5.9%) have multiple alignments 11283 ( 3.5%) are discordant alignments 69.8% concordant pair alignment rate.