Left reads: Input : 448169 Mapped : 368538 (82.2% of input) of these: 12619 ( 3.4%) have multiple alignments (734 have >20) Right reads: Input : 448169 Mapped : 354418 (79.1% of input) of these: 12103 ( 3.4%) have multiple alignments (734 have >20) 80.7% overall read mapping rate. Aligned pairs: 314366 of these: 10903 ( 3.5%) have multiple alignments 5021 ( 1.6%) are discordant alignments 69.0% concordant pair alignment rate.