Left reads: Input : 247045 Mapped : 197966 (80.1% of input) of these: 5494 ( 2.8%) have multiple alignments (349 have >20) Right reads: Input : 247045 Mapped : 190514 (77.1% of input) of these: 5248 ( 2.8%) have multiple alignments (349 have >20) 78.6% overall read mapping rate. Aligned pairs: 161071 of these: 4495 ( 2.8%) have multiple alignments 3570 ( 2.2%) are discordant alignments 63.8% concordant pair alignment rate.