Left reads: Input : 596535 Mapped : 485812 (81.4% of input) of these: 12078 ( 2.5%) have multiple alignments (816 have >20) Right reads: Input : 596535 Mapped : 474960 (79.6% of input) of these: 11736 ( 2.5%) have multiple alignments (816 have >20) 80.5% overall read mapping rate. Aligned pairs: 422814 of these: 10371 ( 2.5%) have multiple alignments 6386 ( 1.5%) are discordant alignments 69.8% concordant pair alignment rate.