Left reads: Input : 349914 Mapped : 276562 (79.0% of input) of these: 27938 (10.1%) have multiple alignments (5124 have >20) Right reads: Input : 349914 Mapped : 267314 (76.4% of input) of these: 27293 (10.2%) have multiple alignments (5119 have >20) 77.7% overall read mapping rate. Aligned pairs: 235663 of these: 24495 (10.4%) have multiple alignments 3897 ( 1.7%) are discordant alignments 66.2% concordant pair alignment rate.