Left reads: Input : 342940 Mapped : 279522 (81.5% of input) of these: 7476 ( 2.7%) have multiple alignments (669 have >20) Right reads: Input : 342940 Mapped : 285076 (83.1% of input) of these: 7716 ( 2.7%) have multiple alignments (669 have >20) 82.3% overall read mapping rate. Aligned pairs: 245493 of these: 6609 ( 2.7%) have multiple alignments 4319 ( 1.8%) are discordant alignments 70.3% concordant pair alignment rate.