Left reads: Input : 325206 Mapped : 274615 (84.4% of input) of these: 12045 ( 4.4%) have multiple alignments (2289 have >20) Right reads: Input : 325206 Mapped : 264873 (81.4% of input) of these: 11544 ( 4.4%) have multiple alignments (2289 have >20) 82.9% overall read mapping rate. Aligned pairs: 235769 of these: 10387 ( 4.4%) have multiple alignments 5068 ( 2.1%) are discordant alignments 70.9% concordant pair alignment rate.