Left reads: Input : 54120 Mapped : 42102 (77.8% of input) of these: 2071 ( 4.9%) have multiple alignments (111 have >20) Right reads: Input : 54120 Mapped : 43081 (79.6% of input) of these: 2118 ( 4.9%) have multiple alignments (111 have >20) 78.7% overall read mapping rate. Aligned pairs: 34875 of these: 1740 ( 5.0%) have multiple alignments 497 ( 1.4%) are discordant alignments 63.5% concordant pair alignment rate.