Left reads: Input : 158834 Mapped : 126693 (79.8% of input) of these: 11197 ( 8.8%) have multiple alignments (436 have >20) Right reads: Input : 158834 Mapped : 127102 (80.0% of input) of these: 11365 ( 8.9%) have multiple alignments (436 have >20) 79.9% overall read mapping rate. Aligned pairs: 107734 of these: 9745 ( 9.0%) have multiple alignments 2761 ( 2.6%) are discordant alignments 66.1% concordant pair alignment rate.