Left reads: Input : 672243 Mapped : 566964 (84.3% of input) of these: 32576 ( 5.7%) have multiple alignments (2590 have >20) Right reads: Input : 672243 Mapped : 544796 (81.0% of input) of these: 31409 ( 5.8%) have multiple alignments (2590 have >20) 82.7% overall read mapping rate. Aligned pairs: 478665 of these: 27755 ( 5.8%) have multiple alignments 11515 ( 2.4%) are discordant alignments 69.5% concordant pair alignment rate.