Left reads: Input : 431296 Mapped : 364828 (84.6% of input) of these: 10556 ( 2.9%) have multiple alignments (410 have >20) Right reads: Input : 431296 Mapped : 359183 (83.3% of input) of these: 10466 ( 2.9%) have multiple alignments (410 have >20) 83.9% overall read mapping rate. Aligned pairs: 319137 of these: 9347 ( 2.9%) have multiple alignments 5085 ( 1.6%) are discordant alignments 72.8% concordant pair alignment rate.