Left reads: Input : 363172 Mapped : 304494 (83.8% of input) of these: 10586 ( 3.5%) have multiple alignments (716 have >20) Right reads: Input : 363172 Mapped : 288026 (79.3% of input) of these: 10107 ( 3.5%) have multiple alignments (716 have >20) 81.6% overall read mapping rate. Aligned pairs: 253252 of these: 8808 ( 3.5%) have multiple alignments 5389 ( 2.1%) are discordant alignments 68.2% concordant pair alignment rate.