Left reads: Input : 352969 Mapped : 288120 (81.6% of input) of these: 26459 ( 9.2%) have multiple alignments (716 have >20) Right reads: Input : 352969 Mapped : 288795 (81.8% of input) of these: 26634 ( 9.2%) have multiple alignments (715 have >20) 81.7% overall read mapping rate. Aligned pairs: 247301 of these: 23097 ( 9.3%) have multiple alignments 6911 ( 2.8%) are discordant alignments 68.1% concordant pair alignment rate.