Left reads: Input : 48915 Mapped : 39918 (81.6% of input) of these: 1185 ( 3.0%) have multiple alignments (116 have >20) Right reads: Input : 48915 Mapped : 38748 (79.2% of input) of these: 1137 ( 2.9%) have multiple alignments (116 have >20) 80.4% overall read mapping rate. Aligned pairs: 33128 of these: 979 ( 3.0%) have multiple alignments 535 ( 1.6%) are discordant alignments 66.6% concordant pair alignment rate.