Left reads: Input : 282559 Mapped : 238479 (84.4% of input) of these: 7555 ( 3.2%) have multiple alignments (1110 have >20) Right reads: Input : 282559 Mapped : 227911 (80.7% of input) of these: 7083 ( 3.1%) have multiple alignments (1110 have >20) 82.5% overall read mapping rate. Aligned pairs: 202358 of these: 6296 ( 3.1%) have multiple alignments 4550 ( 2.2%) are discordant alignments 70.0% concordant pair alignment rate.