Left reads: Input : 399417 Mapped : 333396 (83.5% of input) of these: 10159 ( 3.0%) have multiple alignments (1207 have >20) Right reads: Input : 399417 Mapped : 314045 (78.6% of input) of these: 9566 ( 3.0%) have multiple alignments (1207 have >20) 81.0% overall read mapping rate. Aligned pairs: 277219 of these: 8032 ( 2.9%) have multiple alignments 7120 ( 2.6%) are discordant alignments 67.6% concordant pair alignment rate.