Left reads: Input : 239499 Mapped : 192412 (80.3% of input) of these: 9744 ( 5.1%) have multiple alignments (745 have >20) Right reads: Input : 239499 Mapped : 169557 (70.8% of input) of these: 8564 ( 5.1%) have multiple alignments (745 have >20) 75.6% overall read mapping rate. Aligned pairs: 146426 of these: 7496 ( 5.1%) have multiple alignments 3221 ( 2.2%) are discordant alignments 59.8% concordant pair alignment rate.