Left reads: Input : 249438 Mapped : 203146 (81.4% of input) of these: 6568 ( 3.2%) have multiple alignments (81 have >20) Right reads: Input : 249438 Mapped : 192990 (77.4% of input) of these: 6293 ( 3.3%) have multiple alignments (81 have >20) 79.4% overall read mapping rate. Aligned pairs: 170953 of these: 5577 ( 3.3%) have multiple alignments 4896 ( 2.9%) are discordant alignments 66.6% concordant pair alignment rate.