Left reads: Input : 511563 Mapped : 437029 (85.4% of input) of these: 13355 ( 3.1%) have multiple alignments (777 have >20) Right reads: Input : 511563 Mapped : 396714 (77.5% of input) of these: 12208 ( 3.1%) have multiple alignments (777 have >20) 81.5% overall read mapping rate. Aligned pairs: 355499 of these: 10883 ( 3.1%) have multiple alignments 5694 ( 1.6%) are discordant alignments 68.4% concordant pair alignment rate.