Left reads: Input : 340530 Mapped : 279553 (82.1% of input) of these: 6235 ( 2.2%) have multiple alignments (319 have >20) Right reads: Input : 340530 Mapped : 263613 (77.4% of input) of these: 5940 ( 2.3%) have multiple alignments (319 have >20) 79.8% overall read mapping rate. Aligned pairs: 229458 of these: 5133 ( 2.2%) have multiple alignments 3786 ( 1.6%) are discordant alignments 66.3% concordant pair alignment rate.