Left reads: Input : 529197 Mapped : 462543 (87.4% of input) of these: 43625 ( 9.4%) have multiple alignments (5434 have >20) Right reads: Input : 529197 Mapped : 450000 (85.0% of input) of these: 42998 ( 9.6%) have multiple alignments (5434 have >20) 86.2% overall read mapping rate. Aligned pairs: 404771 of these: 38918 ( 9.6%) have multiple alignments 10919 ( 2.7%) are discordant alignments 74.4% concordant pair alignment rate.