Left reads: Input : 448383 Mapped : 378318 (84.4% of input) of these: 13979 ( 3.7%) have multiple alignments (1107 have >20) Right reads: Input : 448383 Mapped : 359851 (80.3% of input) of these: 13306 ( 3.7%) have multiple alignments (1107 have >20) 82.3% overall read mapping rate. Aligned pairs: 319486 of these: 11876 ( 3.7%) have multiple alignments 6652 ( 2.1%) are discordant alignments 69.8% concordant pair alignment rate.