Left reads: Input : 337389 Mapped : 282922 (83.9% of input) of these: 9342 ( 3.3%) have multiple alignments (200 have >20) Right reads: Input : 337389 Mapped : 262950 (77.9% of input) of these: 8837 ( 3.4%) have multiple alignments (200 have >20) 80.9% overall read mapping rate. Aligned pairs: 234232 of these: 7776 ( 3.3%) have multiple alignments 4387 ( 1.9%) are discordant alignments 68.1% concordant pair alignment rate.