Left reads: Input : 312115 Mapped : 256844 (82.3% of input) of these: 16393 ( 6.4%) have multiple alignments (476 have >20) Right reads: Input : 312115 Mapped : 243308 (78.0% of input) of these: 15600 ( 6.4%) have multiple alignments (476 have >20) 80.1% overall read mapping rate. Aligned pairs: 211405 of these: 13699 ( 6.5%) have multiple alignments 6369 ( 3.0%) are discordant alignments 65.7% concordant pair alignment rate.