Left reads: Input : 410246 Mapped : 349004 (85.1% of input) of these: 50809 (14.6%) have multiple alignments (13639 have >20) Right reads: Input : 410246 Mapped : 327695 (79.9% of input) of these: 48531 (14.8%) have multiple alignments (13639 have >20) 82.5% overall read mapping rate. Aligned pairs: 290288 of these: 42989 (14.8%) have multiple alignments 9456 ( 3.3%) are discordant alignments 68.5% concordant pair alignment rate.