Left reads: Input : 496204 Mapped : 417965 (84.2% of input) of these: 15414 ( 3.7%) have multiple alignments (1117 have >20) Right reads: Input : 496204 Mapped : 407321 (82.1% of input) of these: 15173 ( 3.7%) have multiple alignments (1117 have >20) 83.2% overall read mapping rate. Aligned pairs: 359932 of these: 13306 ( 3.7%) have multiple alignments 8005 ( 2.2%) are discordant alignments 70.9% concordant pair alignment rate.