Left reads: Input : 135445 Mapped : 109099 (80.5% of input) of these: 4457 ( 4.1%) have multiple alignments (317 have >20) Right reads: Input : 135445 Mapped : 107815 (79.6% of input) of these: 4424 ( 4.1%) have multiple alignments (317 have >20) 80.1% overall read mapping rate. Aligned pairs: 93646 of these: 3834 ( 4.1%) have multiple alignments 3168 ( 3.4%) are discordant alignments 66.8% concordant pair alignment rate.