Left reads: Input : 423385 Mapped : 361088 (85.3% of input) of these: 18380 ( 5.1%) have multiple alignments (996 have >20) Right reads: Input : 423385 Mapped : 343432 (81.1% of input) of these: 17751 ( 5.2%) have multiple alignments (996 have >20) 83.2% overall read mapping rate. Aligned pairs: 305707 of these: 15825 ( 5.2%) have multiple alignments 6273 ( 2.1%) are discordant alignments 70.7% concordant pair alignment rate.