Left reads: Input : 409530 Mapped : 351906 (85.9% of input) of these: 11616 ( 3.3%) have multiple alignments (1286 have >20) Right reads: Input : 409530 Mapped : 336442 (82.2% of input) of these: 11077 ( 3.3%) have multiple alignments (1286 have >20) 84.0% overall read mapping rate. Aligned pairs: 301930 of these: 9877 ( 3.3%) have multiple alignments 5690 ( 1.9%) are discordant alignments 72.3% concordant pair alignment rate.