Left reads: Input : 448545 Mapped : 380058 (84.7% of input) of these: 13319 ( 3.5%) have multiple alignments (1020 have >20) Right reads: Input : 448545 Mapped : 360636 (80.4% of input) of these: 12669 ( 3.5%) have multiple alignments (1020 have >20) 82.6% overall read mapping rate. Aligned pairs: 318755 of these: 11111 ( 3.5%) have multiple alignments 6720 ( 2.1%) are discordant alignments 69.6% concordant pair alignment rate.