Left reads: Input : 346200 Mapped : 298337 (86.2% of input) of these: 12982 ( 4.4%) have multiple alignments (1672 have >20) Right reads: Input : 346200 Mapped : 286001 (82.6% of input) of these: 12721 ( 4.4%) have multiple alignments (1672 have >20) 84.4% overall read mapping rate. Aligned pairs: 257451 of these: 11435 ( 4.4%) have multiple alignments 5264 ( 2.0%) are discordant alignments 72.8% concordant pair alignment rate.