Left reads: Input : 129891 Mapped : 101373 (78.0% of input) of these: 3863 ( 3.8%) have multiple alignments (312 have >20) Right reads: Input : 129891 Mapped : 97835 (75.3% of input) of these: 3750 ( 3.8%) have multiple alignments (312 have >20) 76.7% overall read mapping rate. Aligned pairs: 82485 of these: 3085 ( 3.7%) have multiple alignments 1947 ( 2.4%) are discordant alignments 62.0% concordant pair alignment rate.