Left reads: Input : 240509 Mapped : 200137 (83.2% of input) of these: 21054 (10.5%) have multiple alignments (3375 have >20) Right reads: Input : 240509 Mapped : 189152 (78.6% of input) of these: 20275 (10.7%) have multiple alignments (3375 have >20) 80.9% overall read mapping rate. Aligned pairs: 167110 of these: 18172 (10.9%) have multiple alignments 5277 ( 3.2%) are discordant alignments 67.3% concordant pair alignment rate.