Left reads: Input : 293693 Mapped : 254398 (86.6% of input) of these: 11367 ( 4.5%) have multiple alignments (469 have >20) Right reads: Input : 293693 Mapped : 242721 (82.6% of input) of these: 10987 ( 4.5%) have multiple alignments (469 have >20) 84.6% overall read mapping rate. Aligned pairs: 221222 of these: 9942 ( 4.5%) have multiple alignments 5507 ( 2.5%) are discordant alignments 73.4% concordant pair alignment rate.