Left reads: Input : 466792 Mapped : 377547 (80.9% of input) of these: 13516 ( 3.6%) have multiple alignments (1142 have >20) Right reads: Input : 466792 Mapped : 384653 (82.4% of input) of these: 13730 ( 3.6%) have multiple alignments (1142 have >20) 81.6% overall read mapping rate. Aligned pairs: 328272 of these: 11833 ( 3.6%) have multiple alignments 5464 ( 1.7%) are discordant alignments 69.2% concordant pair alignment rate.