Left reads: Input : 260831 Mapped : 219445 (84.1% of input) of these: 29458 (13.4%) have multiple alignments (504 have >20) Right reads: Input : 260831 Mapped : 214282 (82.2% of input) of these: 29037 (13.6%) have multiple alignments (504 have >20) 83.1% overall read mapping rate. Aligned pairs: 189018 of these: 25904 (13.7%) have multiple alignments 5639 ( 3.0%) are discordant alignments 70.3% concordant pair alignment rate.