Left reads: Input : 441936 Mapped : 372914 (84.4% of input) of these: 12367 ( 3.3%) have multiple alignments (221 have >20) Right reads: Input : 441936 Mapped : 354825 (80.3% of input) of these: 11903 ( 3.4%) have multiple alignments (221 have >20) 82.3% overall read mapping rate. Aligned pairs: 316660 of these: 10641 ( 3.4%) have multiple alignments 7952 ( 2.5%) are discordant alignments 69.9% concordant pair alignment rate.