Left reads: Input : 379865 Mapped : 311712 (82.1% of input) of these: 20873 ( 6.7%) have multiple alignments (1426 have >20) Right reads: Input : 379865 Mapped : 293479 (77.3% of input) of these: 19911 ( 6.8%) have multiple alignments (1426 have >20) 79.7% overall read mapping rate. Aligned pairs: 253286 of these: 17599 ( 6.9%) have multiple alignments 6489 ( 2.6%) are discordant alignments 65.0% concordant pair alignment rate.