Left reads: Input : 347919 Mapped : 292211 (84.0% of input) of these: 30238 (10.3%) have multiple alignments (685 have >20) Right reads: Input : 347919 Mapped : 274761 (79.0% of input) of these: 29060 (10.6%) have multiple alignments (685 have >20) 81.5% overall read mapping rate. Aligned pairs: 243198 of these: 25678 (10.6%) have multiple alignments 5337 ( 2.2%) are discordant alignments 68.4% concordant pair alignment rate.