Left reads: Input : 400141 Mapped : 340950 (85.2% of input) of these: 10485 ( 3.1%) have multiple alignments (1089 have >20) Right reads: Input : 400141 Mapped : 320293 (80.0% of input) of these: 9864 ( 3.1%) have multiple alignments (1089 have >20) 82.6% overall read mapping rate. Aligned pairs: 286348 of these: 8819 ( 3.1%) have multiple alignments 6217 ( 2.2%) are discordant alignments 70.0% concordant pair alignment rate.