Left reads: Input : 264247 Mapped : 220980 (83.6% of input) of these: 6000 ( 2.7%) have multiple alignments (557 have >20) Right reads: Input : 264247 Mapped : 210418 (79.6% of input) of these: 5765 ( 2.7%) have multiple alignments (557 have >20) 81.6% overall read mapping rate. Aligned pairs: 185138 of these: 5002 ( 2.7%) have multiple alignments 3585 ( 1.9%) are discordant alignments 68.7% concordant pair alignment rate.