Left reads: Input : 116802 Mapped : 95318 (81.6% of input) of these: 2801 ( 2.9%) have multiple alignments (229 have >20) Right reads: Input : 116802 Mapped : 88901 (76.1% of input) of these: 2638 ( 3.0%) have multiple alignments (229 have >20) 78.9% overall read mapping rate. Aligned pairs: 77238 of these: 2281 ( 3.0%) have multiple alignments 1377 ( 1.8%) are discordant alignments 64.9% concordant pair alignment rate.