Left reads: Input : 498322 Mapped : 421064 (84.5% of input) of these: 27077 ( 6.4%) have multiple alignments (4682 have >20) Right reads: Input : 498322 Mapped : 401001 (80.5% of input) of these: 26164 ( 6.5%) have multiple alignments (4681 have >20) 82.5% overall read mapping rate. Aligned pairs: 355431 of these: 23254 ( 6.5%) have multiple alignments 9150 ( 2.6%) are discordant alignments 69.5% concordant pair alignment rate.