Left reads: Input : 407609 Mapped : 330589 (81.1% of input) of these: 8745 ( 2.6%) have multiple alignments (627 have >20) Right reads: Input : 407609 Mapped : 287966 (70.6% of input) of these: 7588 ( 2.6%) have multiple alignments (627 have >20) 75.9% overall read mapping rate. Aligned pairs: 251203 of these: 6622 ( 2.6%) have multiple alignments 4322 ( 1.7%) are discordant alignments 60.6% concordant pair alignment rate.