Left reads: Input : 844920 Mapped : 753917 (89.2% of input) of these: 33635 ( 4.5%) have multiple alignments (1061 have >20) Right reads: Input : 844920 Mapped : 718731 (85.1% of input) of these: 32500 ( 4.5%) have multiple alignments (1061 have >20) 87.1% overall read mapping rate. Aligned pairs: 654945 of these: 29447 ( 4.5%) have multiple alignments 12705 ( 1.9%) are discordant alignments 76.0% concordant pair alignment rate.