Left reads: Input : 711143 Mapped : 611044 (85.9% of input) of these: 32649 ( 5.3%) have multiple alignments (3872 have >20) Right reads: Input : 711143 Mapped : 582032 (81.8% of input) of these: 31416 ( 5.4%) have multiple alignments (3872 have >20) 83.9% overall read mapping rate. Aligned pairs: 521567 of these: 28169 ( 5.4%) have multiple alignments 9648 ( 1.8%) are discordant alignments 72.0% concordant pair alignment rate.